CEUData | Example data set for LDheatmap |
CEUDist | Example data set for LDheatmap |
CEUSNP | Example data set for LDheatmap |
CHBJPTData | Example of data set for LDHeatmap |
CHBJPTDist | Example of data set for LDHeatmap |
CHBJPTSNP | Example of data set for LDHeatmap |
GIMAP5 | Example data set for LDHeatmap |
GIMAP5.CEU | Example data set for LDheatmap |
hapmapCEU | Example data set for LDheatmap |
hapmapCHB | Example of data set for LDHeatmap |
hapmapJPT | Example of data set for LDHeatmap |
LDheatmap | This function produces a pairwise LD plot. |
LDheatmap.addGenes | Add gene plot to an LDheatmap object. |
LDheatmap.addGrob | Add a graphical object to an LDheatmap plot |
LDheatmap.addRecombRate | Add recombination rate plot to an LD heat map. |
LDheatmap.addScatterplot | Add a scatter plot to an LDheatmap object |
LDheatmap.highlight | Highlight a genetic region in the linkage disequilibrium heat map |
LDheatmap.marks | Plots a symbol in the centers of cells of the heat map image |
plotGenes | Plot genes from a specified region of the human genome. |
recombRate | Produce recombination rate plot. |
vcfR2SnpMatrix | Extract genotype information from a vcfR object |