Sparse Family and Selection Index


[Up] [Top]

Documentation for package ‘SFSI’ version 1.3.1

Help Pages

coef.LASSO LASSO methods
coef.SSI SSI methods
collect Collecting SSI outputs
cov2cor2 Conversion of a covariance matrix to a distance/correlation matrix
cov2dist Conversion of a covariance matrix to a distance/correlation matrix
fitBLUP Fitting a Linear Mixed model to calculate BLUP
fitted.LASSO LASSO methods
fitted.SSI SSI methods
genCOV_xy Wheat dataset
genCOV_yy Wheat dataset
getGenCov Pairwise Genetic Covariance
LARS Least Angle Regression to solve LASSO-type problems
M Wheat dataset
multitrait.plot Accuracy vs penalization from Multitrait SSI
net Graphical Network
path.plot Coefficients path plot
plot.net Plotting a network
plot.SSI Accuracy vs penalization plot
Prune R-squared pruning
readBinary Save/read binary files
resCOV_yy Wheat dataset
saveBinary Save/read binary files
solveEN Coordinate Descent algorithm to solve Elastic-Net-type problems
SSI Sparse Selection Index
SSI.CV Sparse Selection Index
summary.SSI SSI methods
VI_E1 Wheat dataset
wheatHTP Wheat dataset
X_E1 Wheat dataset
Y Wheat dataset