coef.LASSO | LASSO methods |
coef.SSI | SSI methods |
collect | Collecting SSI outputs |
cov2cor2 | Conversion of a covariance matrix to a distance/correlation matrix |
cov2dist | Conversion of a covariance matrix to a distance/correlation matrix |
fitBLUP | Fitting a Linear Mixed model to calculate BLUP |
fitted.LASSO | LASSO methods |
fitted.SSI | SSI methods |
genCOV_xy | Wheat dataset |
genCOV_yy | Wheat dataset |
getGenCov | Pairwise Genetic Covariance |
LARS | Least Angle Regression to solve LASSO-type problems |
M | Wheat dataset |
multitrait.plot | Accuracy vs penalization from Multitrait SSI |
net | Graphical Network |
path.plot | Coefficients path plot |
plot.net | Plotting a network |
plot.SSI | Accuracy vs penalization plot |
Prune | R-squared pruning |
readBinary | Save/read binary files |
resCOV_yy | Wheat dataset |
saveBinary | Save/read binary files |
solveEN | Coordinate Descent algorithm to solve Elastic-Net-type problems |
SSI | Sparse Selection Index |
SSI.CV | Sparse Selection Index |
summary.SSI | SSI methods |
VI_E1 | Wheat dataset |
wheatHTP | Wheat dataset |
X_E1 | Wheat dataset |
Y | Wheat dataset |