Biodiversity Data Checks

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Documentation for package ‘bdchecks’ version 0.1.7

• DESCRIPTION file.

Help Pages

createDCclassMain	Create a data check object
createDCclassMeta	Create a data check metadata object
dataBats	Australian bats biodiversity data
dataCheck	Create Data Check Class
dataCheck-class	Create Data Check Class
dataCheckFlag	Combined Data Checks Class
dataCheckFlag-class	Combined Data Checks Class
dataCheckFlag_SINGLE	Single Data Check Flag Class
dataCheckFlag_SINGLE-class	Single Data Check Flag Class
dataCheckMeta	Data Check Meta-Data Class
dataCheckMeta-class	Data Check Meta-Data Class
DCtest	Data checks in YAML format
DC_basisOfRecordBadlyFormed	Data check basisOfRecordBadlyFormed Check if the specific nature of the data record is within controlled vocabulary
DC_classUnknown	Data check classUnknown The full scientific name of the class in which the taxon is classified is within given vocabulary
DC_coordinatePrecisionMismatch	Data check coordinatePrecisionMismatch Check if decimal values given in decimalLatitude and decimalLongitude does agree witha a decimal representation of the precision of the coordinates (coordinatePrecision)
DC_coordinatesZero	Data check coordinatesZero Check if decimal values given in decimalLatitude and decimalLongitude are not zero
DC_countryMismatch	Data check countryMismatch Check if given country match given country code.
DC_countryNameUnknown	Data check countryNameUnknown Check if the name of the country or major administrative unit in which the location occurs is within given vocabulary
DC_dataGeneralised	Data check dataGeneralised Chech if dataGeneralizations is a NULL column (ie, latitude and longitude were not generalized)
DC_dateIdentifiedInFuture	Data check dateIdentifiedInFuture Check if record identification date is not in the future
DC_dateNull	Data check dateNull Check if eventDate, year, verbatimEventDate are not NULL
DC_dayInvalid	Data check dayInvalid Check if event day is valid (1 <= integer <= 31)
DC_depthOutOfRange	Data check depthOutOfRange Check if depthOutOfRange is not out of range.
DC_elevationOutOfRange	Data check elevationOutOfRange Check if elevationOutOfRange is not out of range.
DC_eventDateInFuture	Data check eventDateInFuture Check if event date is not in the future
DC_identifiedDateImprobable	Data check identifiedDateImprobable Check if identification date is between Linnaeus and current date
DC_individualcountInvalid	Data check individualcountInvalid Check if the number of individuals represented present at the time of the occurrence is and intiger
DC_modifiedInFuture	Data check modifiedInFuture Check if date on which the resource was changed is not in the future
DC_monthInvalid	Data check monthInvalid Check if event month is valid (1 <= integer <= 12)
DC_namePublishedYearInFuture	Data check namePublishedYearInFuture Check if year in which scientific name was published is not in the future
DC_occurrenceIdNotGuid	Data check occurrenceIdNotGuid Check if an identifier for the occurrence is a globally uniquely identifier (currently we use regex pattern solution is implemented)
DC_precisionRangeMismatch	Data check precisionRangeMismatch Check if precision range mismatch is between 0 and 1
DC_uncertaintyRangeMismatch	Data check uncertaintyRangeMismatch Check if geopoint uncertainty range mismatch is a positive integer (meters).
DC_yearMissing	Data check yearMissing Check if year information is not missing
exportDataCheck	Export Data Checks
exportDataCheck-method	Export Data Checks
exportDC	Export data checks as R objects
filterDataCheck	Filter Data Checks
generateDCfilts	Filter Data Checks
generateRoxygenComment	Generate roxygen2 documentation from data check object
getDC	Load Data Checks
performDataCheck	Perform Data Checks
performDC	Perform Data Checks
performDC-method	Perform Data Checks
runbdchecks	Launch bdchecks Shiny Application
show-method	Create Data Check Class
show-method	Combined Data Checks Class
summary_DC	Summarise Data Checks