allelematch
unique analysis

unique N=12
samples N=20

loci N=10
locus names: LOC1a-LOC1b, LOC2a-LOC2b, LOC3a-LOC3b, LOC4a-LOC4b, LOC5a-LOC5b, LOC6a-LOC6b, LOC7a-LOC7b, LOC8a-LOC8b, LOC9a-LOC9b, LOC10a-LOC10b

missing data represented by: -99
clustered genotypes consensus method: 1
Psib calculated for: samples with no mismatches

alleleMismatch (m-hat; maximum number of mismatching alleles): 2
cutHeight (d-hat; dynamic tree cutting height): 0.1
matchThreshold (s-hat; lowest matching score returned): 0.9

unclassified (samples that were not classified) N=0
multipleMatch (samples that match more than one unique genotype) N=0

Note: Unique genotypes are determined based on clustering of their scores followed by a dynamic tree cutting procedure (see supplementary documentation). Psib appears for reference purposes and is not used to determine unique genotypes. It is calculated using allele frequencies in the unique genotype set.

summary generated: Fri Oct 07 09:51:00 2011


Unique genotypes
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Type 
1
103
108
201
201
314
318
405
417
514
519
603
618
709
715
804
816
911
914
1007
1015
0.000098
UNIQUE
3
104
120
201
208
306
314
407
407
502
502
607
616
713
715
804
816
912
914
1006
1015
0.000077
UNIQUE
5
103
109
201
209
306
306
408
414
501
502
603
607
706
706
804
804
914
918
1006
1006
0.000048
UNIQUE
7
108
109
201
208
314
314
404
417
501
514
607
618
706
715
804
811
914
914
1006
1015
0.00015
UNIQUE
8
104
110
207
208
307
317
417
417
516
516
603
603
717
719
804
812
907
914
1007
1019
0.000042
UNIQUE
9
109
120
208
208
307
307
407
417
505
519
607
618
703
709
804
805
914
914
1007
1015
0.00013
UNIQUE
11
108
109
201
208
306
317
404
413
502
514
603
607
703
719
812
816
911
911
1015
1015
0.0001
UNIQUE
13
109
110
203
207
313
317
407
417
505
519
607
618
706
719
811
811
914
915
1018
1018
0.000039
UNIQUE
14
108
120
208
209
307
313
417
417
502
516
602
618
703
715
811
816
911
914
1007
1015
0.000089
UNIQUE
16
108
109
203
203
317
318
407
417
505
519
607
616
712
715
804
812
914
915
1015
1015
0.000072
UNIQUE
17
103
109
208
208
306
307
404
413
502
519
602
603
709
717
816
816
911
914
1005
1007
0.000068
UNIQUE
19
108
114
201
207
-99
-99
404
413
502
519
603
607
712
715
804
811
911
911
1015
1018
0.0002
UNIQUE
There were 12 unique genotypes identified using the parameters supplied.


Unique genotype (1 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
1
103
108
201
201
314
318
405
417
514
519
603
618
709
715
804
816
911
914
1007
1015
UNIQUE
1
103
108
201
201
314
318
405
417
514
519
603
618
709
715
804
816
911
914
1007
1015
0.000098
1
MATCH
2
103
108
201
201
314
318
405
417
514
519
603
618
709
715
804
816
911
914
1007
1015
0.000098
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (2 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
3
104
120
201
208
306
314
407
407
502
502
607
616
713
715
804
816
912
914
1006
1015
UNIQUE
3
104
120
201
208
306
314
407
407
502
502
607
616
713
715
804
816
912
914
1006
1015
0.000077
1
MATCH
4
104
120
201
208
306
314
407
407
502
502
607
616
713
715
804
816
912
914
1006
1015
0.000077
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (3 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
5
103
109
201
209
306
306
408
414
501
502
603
607
706
706
804
804
914
918
1006
1006
UNIQUE
5
103
109
201
209
306
306
408
414
501
502
603
607
706
706
804
804
914
918
1006
1006
0.000048
1
MATCH
6
103
109
201
209
306
306
408
414
501
502
603
607
706
706
804
804
914
918
1006
1006
0.000048
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (4 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
7
108
109
201
208
314
314
404
417
501
514
607
618
706
715
804
811
914
914
1006
1015
UNIQUE
7
108
109
201
208
314
314
404
417
501
514
607
618
706
715
804
811
914
914
1006
1015
0.00015
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (5 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
8
104
110
207
208
307
317
417
417
516
516
603
603
717
719
804
812
907
914
1007
1019
UNIQUE
8
104
110
207
208
307
317
417
417
516
516
603
603
717
719
804
812
907
914
1007
1019
0.000042
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (6 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
9
109
120
208
208
307
307
407
417
505
519
607
618
703
709
804
805
914
914
1007
1015
UNIQUE
9
109
120
208
208
307
307
407
417
505
519
607
618
703
709
804
805
914
914
1007
1015
0.00013
1
MATCH
10
109
120
208
208
307
307
407
417
505
519
607
618
703
709
804
805
914
914
1007
1015
0.00013
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (7 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
11
108
109
201
208
306
317
404
413
502
514
603
607
703
719
812
816
911
911
1015
1015
UNIQUE
11
108
109
201
208
306
317
404
413
502
514
603
607
703
719
812
816
911
911
1015
1015
0.0001
1
MATCH
12
108
109
201
208
306
317
404
413
502
514
603
607
703
719
812
816
911
911
1015
1015
0.0001
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (8 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
13
109
110
203
207
313
317
407
417
505
519
607
618
706
719
811
811
914
915
1018
1018
UNIQUE
13
109
110
203
207
313
317
407
417
505
519
607
618
706
719
811
811
914
915
1018
1018
0.000039
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (9 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
14
108
120
208
209
307
313
417
417
502
516
602
618
703
715
811
816
911
914
1007
1015
UNIQUE
14
108
120
208
209
307
313
417
417
502
516
602
618
703
715
811
816
911
914
1007
1015
0.000089
1
MATCH
15
108
120
208
209
307
313
417
417
502
516
602
618
703
715
811
816
911
914
1007
1015
0.000089
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (10 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
16
108
109
203
203
317
318
407
417
505
519
607
616
712
715
804
812
914
915
1015
1015
UNIQUE
16
108
109
203
203
317
318
407
417
505
519
607
616
712
715
804
812
914
915
1015
1015
0.000072
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (11 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
17
103
109
208
208
306
307
404
413
502
519
602
603
709
717
816
816
911
914
1005
1007
UNIQUE
17
103
109
208
208
306
307
404
413
502
519
602
603
709
717
816
816
911
914
1005
1007
0.000068
1
MATCH
18
103
109
208
208
306
307
404
413
502
519
602
603
709
717
816
816
911
914
1005
1007
0.000068
1
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Unique genotype (12 of 12)
 
 
LOC1a 
LOC1b 
LOC2a 
LOC2b 
LOC3a 
LOC3b 
LOC4a 
LOC4b 
LOC5a 
LOC5b 
LOC6a 
LOC6b 
LOC7a 
LOC7b 
LOC8a 
LOC8b 
LOC9a 
LOC9b 
LOC10a 
LOC10b 
Psib 
Score 
Type 
19
108
114
201
207
-99
-99
404
413
502
519
603
607
712
715
804
811
911
911
1015
1018
UNIQUE
19
108
114
201
207
-99
-99
404
413
502
519
603
607
712
715
804
811
911
911
1015
1018
0.0002
1
MATCH
20
108
114
201
207
306
317
404
413
502
519
603
607
712
715
804
811
911
911
1015
1018
0.0002
0.95
MATCH
Unique genotype compared against 20 samples, returning those with score>=0.9
Psib is calculated for samples that have no mismatches. Differences among samples are due to loci with missing data.


Generated by allelematch: an R package
To reference this analysis please use citation("allelematch")